PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29889.m003269
Common NameRCOM_0999870
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family CAMTA
Protein Properties Length: 918aa    MW: 104145 Da    PI: 7.4574
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29889.m003269genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1126.21.3e-39311363118
           CG-1   3 kekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrc 98 
                    + ++rwl+++ei+aiL n++ ++++ ++ + p          +k ++frkDG++wkkkkdgkt++E+he+LKvg+ e +++yYah+e+n+tf rrc
  29889.m003269  31 EATSRWLRPNEIHAILCNYKYFTIHVKPVKLP----------RKAKNFRKDGHNWKKKKDGKTIKEAHEHLKVGNEERIHVYYAHGEDNSTFVRRC 116
                    4489*******************888777666..........67889************************************************* PP

           CG-1  99 ywlLeeelekivlvhylevk 118
                    ywlL+++le+ivlvhy+e++
  29889.m003269 117 YWLLDKTLEHIVLVHYRETQ 136
                    *****************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143762.65825141IPR005559CG-1 DNA-binding domain
SMARTSM010765.2E-5928136IPR005559CG-1 DNA-binding domain
PfamPF038594.9E-3431134IPR005559CG-1 DNA-binding domain
PfamPF018333.0E-4369455IPR002909IPT domain
SuperFamilySSF812961.05E-12370456IPR014756Immunoglobulin E-set
CDDcd002042.86E-15553663No hitNo description
Gene3DG3DSA:1.25.40.205.9E-16553666IPR020683Ankyrin repeat-containing domain
PfamPF127964.0E-7554633IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484033.11E-17556668IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.592571636IPR020683Ankyrin repeat-containing domain
SMARTSM002481.7E-6604633IPR002110Ankyrin repeat
PROSITE profilePS5008812.155604636IPR002110Ankyrin repeat
SuperFamilySSF525403.19E-6716819IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM0001534749771IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.712769796IPR000048IQ motif, EF-hand binding site
PfamPF006120.011771789IPR000048IQ motif, EF-hand binding site
SMARTSM00015190772790IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0056791813IPR000048IQ motif, EF-hand binding site
PROSITE profilePS5009610.438792816IPR000048IQ motif, EF-hand binding site
PfamPF006120.0053794813IPR000048IQ motif, EF-hand binding site
SMARTSM0001531871893IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.895873901IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 918 aa     Download sequence    Send to blast
MESSLPGRLV GSDIHGFHTL QDLDFGNIMA EATSRWLRPN EIHAILCNYK YFTIHVKPVK  60
LPRKAKNFRK DGHNWKKKKD GKTIKEAHEH LKVGNEERIH VYYAHGEDNS TFVRRCYWLL  120
DKTLEHIVLV HYRETQELQG SPVTPLNSNS SSVSDQSPRL LSEADSGTYV SDEKELQGDS  180
LTVINHELRL HEINTLEWDE LVTNDPNNSA TAKEGDGLSI ICYKIMGFAQ QNQIAVNGSM  240
NNGRYLSPYN LSAEISPLDN LTKPVVRSND SHFSIPDNEY IQSTGVQVNS NVQQKGSNFL  300
GTGDTLDMLV NDGLQSQDSF GRWIDYIIAD SPGSVDNAVL ESSFSSGLDS STSPAIDQLQ  360
SSVPEQIFVI TDISPAWAFS TETTKILVVG YFHEQYLQLA KSNMFCVCGD AYALVDIVQT  420
GVYRCLVSPH FPGIVNLFLS LDGHKPISQL INFEYRAPLH DPVVSSEDKT NWEEFKLQMR  480
LAHLLFSTSK SLGIQTSKVS SITLKEAKKF DHKTSNIHRS WAYLIKLIED NRLSFSQAKD  540
SLFELTLKSM LKEWLLERVV EGCKTTEYDA QGQGVIHLCS ILGYTWAVYL FSWSGLSLDF  600
RDKHGWTALH WAAYYGREKM VAVLLSAGAK PNLVTDPTKE NPDGCMAADL ASMKGYDGLA  660
AYLSEKALVA HFKDMSIAGN ASGTLQQTSA TDIVNSENLS EEELYLKDTL AAYRTAADAA  720
ARIQSAFREH SLKVRTTAVQ SANPEDEART IVAAMKIQHA YRNFETRKKM AAAVRIQYRF  780
RTWKMRKEFL NMRRQVIRIQ AAFRGYQVRR QYRKIIWSVG VLEKAILRWR LKRKGFRGLQ  840
IDPVEAVADL KQGSDTEEDF YKASRKQAEE RVERAVVRVQ AMFRSKKAQA EYRRMKLTHY  900
QVKLEYEELL DHDIDIDR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00435DAPTransfer from AT4G16150Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015574687.10.0PREDICTED: LOW QUALITY PROTEIN: calmodulin-binding transcription activator 5
SwissprotO234630.0CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBLB9RZM90.0B9RZM9_RICCO; Calmodulin-binding transcription activator (Camta), plants, putative
STRINGPOPTR_0010s15160.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42883459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16150.10.0calmodulin binding;transcription regulators